So, it does pop up.

If you use WKIX32 as the script processor, then you will not see a console unless you have console output in yoru script. Are you using KIX32 or WKIX32? You could also put a sETCONSOLE command into the script, thou as long as RunloginScriptSync=1 there should be a console with KIX32. Never seen it otherwise.
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There are two types of vessels, submarines and targets.